Describe a situation where you had to use a nested function in R for a complex task. What were some of the challenges you faced, and how did you overcome them?

One situation where you might need to use a nested function in R for a complex task is when handling complex data manipulation or transformations, implementing intricate statistical calculations, or developing custom modeling or simulation procedures. Challenges in such scenarios may include managing variable scopes, dealing with large datasets, optimizing performance, and ensuring code readability. These challenges can be mitigated by carefully planning the nested functions, testing and debugging extensively, and breaking down complex tasks into smaller, more manageable components.